Chip lets scientists study biocement formation in real-time

Scientists from EPFL and the University of Lausanne have used a chip that was originally designed for environmental science to study the properties of biocement formation. This material has the potential to replace traditional cement binders in certain civil engineering applications.

The chip has the size of a credit card and its surface is engraved with a flow channel measuring one meter from end to end and as thick as a human hair. Researchers can inject a solution into one end of the channel and, with the help of time-lapse microscopy, observe the solution’s behavior over several hours. Medical scientists have used similar chips for healthcare applications, such as to examine how arteries get clogged or how a drug spreads into the bloodstream, while environmental engineers have applied them to the study of biofilms and contaminants in drinking water.

Until now, the microfluidic chip was used in the medical and environmental research. © Alain Herzog / 2022 EPFL

Now, a team of civil engineers at EPFL’s Laboratory of Soil Mechanics (LMS), together with scientists from the Faculty of Geosciences and Environment at the University of Lausanne (UNIL), have repurposed the chip to understand complex transport-reaction phenomena involved in the formation of new kinds of biocement. Ariadni Elmaloglou, a PhD student, together with Dimitrios Terzis, one of her thesis supervisors from EPFL’s Laboratory of Soil Mechanics (LMS), injected biocement solutions into microfluidic chips resembling different types of sand to see how the minerals form and the flow responds. Besides the sand types, the other main biocement ingredients – calcium and urea – remained the same. “Thanks to the chip, we were able to observe variations in biocement mass distribution in the different mixtures,” says Elmaloglou. “For instance, we could see where minerals were formed and which mixtures can lead to superior mechanical properties across the long flow path. Due to its miniaturized volumes, the chip enables us to perform multiple experiments with different mixtures in order to design efficient biocementation protocols.”

Due to its miniaturized volumes, the chip enables us to perform multiple experiments with different mixtures in order to design efficient biocementation protocols.

Ariadni Elmaloglou, a PhD student, EPFL’s Laboratory of Soil Mechanics (LMS)

Meter-long testing

The engineers’ findings have just been published in Scientific Reports, a Nature portfolio journal. Theirs is the first study to examine biocement formation over the length of a meter in real-time, which is important for many potential applications such as crack repair, carbon storage and soil remediation (see box). All the data have been made available in open-source format in order to encourage further research on this topic.

Meanwhile, the LMS engineers have already started the next step of their study. “The chip makes it easy for us to test biocements made with aggregates of recycled materials – like glass, plastic or crushed concrete – rather than sand,” says Terzis. These biocements could help mitigate the construction industry’s carbon footprint, or even revolutionize the industry altogether. “The industry still relies heavily on concrete, even though the ingredients used to make it – especially sand – are getting harder to source. Our study shows that a cross-disciplinary approach can go a long way towards changing that. But we need to be open to methods from other research fields.”

Inventing new kinds of biocement at EPFL
For his PhD thesis at LMS, Dimitrios Terzis developed a new kind of biocement made with bacteria and urea. The process involves the use of calcium carbonate (CaCO3) crystals to bind soil particles together, instead of cement clinkers. The result is a material that’s bio-based, easy to use, resistant and fairly low cost compared with existing binders, including cement, lime and industrial resins. Resins in particular can become relatively unstable over the long term, can contaminate the soil with microplastics or toxic compounds, and can increase groundwater alkalinity to levels above acceptable limits. The EPFL-developed biocement can be produced on site cheaply and at ambient temperature, with only a small amount of electricity required. Operators can adjust biocementation levels to their specific needs. If only a small amount of CaCO3 is added, operators obtain a sandstone-like result that’s resistant enough to withstand the earthquake-induced shear stresses that can lead to soil liquefaction. Other applications can help resolve slope stabilization problems or restore existing foundations. If more CaCO3 bio-minerals are added, the result is a mixture that can be used as a construction material or for waterproofing soil. To take their technology to market, Terzis and Prof. Lyesse Laloui founded MeduSoil, an EPFL startup, in 2018. The firm has already carried out field demonstrations in Switzerland and abroad.

Funding

European Research Council Advanced Grant: Bio-mediated Geo-material Strengthening for engineering applications (BIOGEOS)

References

Ariadni Elmaloglou, Dimitrios Terzis, Pietro De Anna and Lyesse Laloui, “Microfluidic study in a meter-long reactive path reveals how the medium’s structural heterogeneity shapes MICP-induced biocementation,” Scientific Reports, 15 November 2022

Author: Sandrine Perroud

Source: Architecture, Civil and Environmental Engineering | ENAC

Dr Harran Ray passed his viva

Dr Harran Ray passed his viva on 24th November 2022 after a 4-year journey that involved experiments that span between few milliliters to 120 cubic meters!

His PhD thesis is titled “Mechanical performance and upscaling of bioimproved soils”.

Funding

European Research Council Advanced Grant: Bio-mediated Geo-material Strengthening for engineering applications (BIOGEOS)

Dr Nimisha Roy completed her academic visit at BIOGEOS this summer

It was a great pleasure to welcome at BIOGEOS and EPFL Dr. Nimisha Roy as an academic guest. Dr. Roy is Postdoctoral Fellow in the Geosystems group of the School of Civil and Environmental Engineering at Georgia Tech, US. She received her Ph.D. degree in Computational Science and Engineering from Georgia Tech in December 2021, under the supervision of Prof. David Frost. Her Ph.D. thesis, funded by US National Science Foundation, focused on characterizing the three-dimensional pore space architecture of particulate materials and its applications in the mechanics of geomaterials and biocemented sands under static and dynamic loading. Dr Roy has received several awards as a graduate student and undergraduate instructor at Georgia Tech. She has published over 20 journal and conference papers. From Fall 2022, she has been appointed as a Lecturer in the College of Computing at Georgia Tech. 

Dr Roy stayed at the Laloui Group this summer for 1.5 month and worked on applying her computational approaches to the characterization of the 3D pore and contact network of bio-cemented granular packings. She has also presented her work in this field, in collaboration with Dr Dimitrios Terzis, at AGU Fall 2021 Conference. On 4th of July she presented her contributions to research at a seminar attended by the Laloui Group.

Professor Lyesse Laloui delivers the prestigious Vienna Terzaghi Lecture

© 2022 EPFL

The Vienna Terzaghi Lecture 2022 has been awarded to, and presented by, Professor Lyesse Laloui of EPFL at this year’s Austrian Geotechnical Conference on the 19th of April. Since 1997, the combined lecture and award have been given biennially to internationally renowned geotechnical engineers by the Association of Austrian Drilling, Well Construction and Foundation Engineering Companies (VÖBU), the Austrian Association of Engineers and Architects (ÖIAV), the Austrian National Committee (ASMGE) of the International Society for Soil Mechanics and Geotechnical Engineering (ISSMGE) and the Institute of Geotechnics, Foundation Engineering, Soil and Rock Mechanics at the University of Vienna.

This year’s winner, Professor Laloui, is Chair Professor of Soil Mechanics and the European Vice President-elect of the International Society of Soil Mechanics and Geotechnical Engineering (ISSMGE). His lecture titled, “Tailor-made soil properties by bio-geochemical means” presented his latest research on the multiphysical analysis of bio-cementation processes in nature and their practical engineering applications.

The lecture is named in honor of Karl von Terzaghi, who is considered the founding father of soil mechanics, a field of engineering exploring the mechanics of soils and its application in geotechnical engineering. His radical work on the properties of soils led him to develop unifying concepts on earth pressure and slope stability.

© 2022 EPFL

Throughout his distinguished career, Professor Laloui has looked to apply and build upon the fundamentals that Karl Terzaghi developed. Terzaghi observed, “Rainfall-induced pore pressure hike is not the cause of landslides, but a contributing factor. There were many higher hikes in the geological past! The cause is long-term gradual, cumulative chemical weathering which weakens inter-granular bonds which leads to decrease of cohesion”.

These pioneering ideas became the foundational theory behind Laloui’s latest research project BIOGEOS, an ERC-funded exploration of the interaction between water and soils which, rather than decreasing the cohesion as described by Terzaghi, strengthens it through natural bio-cementation.

Author: Brendan Smith

Source: Soil Mechanics Laboratory

The Laloui Group Releases Its Annual Report for 2021

The Laloui Group has released its annual report for 2021 detailing notable achievements, research activities, and technological innovation throughout the year. Despite many academic challenges stemming from the pandemic, the report shows that The Laloui Group continues to develop the research and tools required to deliver innovative and sustainable engineering solutions for the 21st century.
Laloui Group Director, Prof. Lyesse Laloui said he is extremely proud of the Group’s continued high performance, “2021 has once again challenged our team yet we have adapted and risen to the occasion… cementing our place as a world-leading research and development lab”.

The BIOGEOS Project is featured on page 22.

Source: https://actu.epfl.ch/news/the-laloui-group-releases-its-annual-report-for-20/

Reach for the sun: the bacteria way | Dimitrios Terzis | TEDxGeneva

“Nature has been the home to efficient mechanisms that had millions of years of evolution to reach perfection. Living systems will be the next thing in construction, in the same way they revolutionized other fields.”

Watch BioGeoS Research Scientist & Medusoil co-founder Dimitrios Terzis’ new ted talk here:

Prof. Lyesse Laloui to deliver the prestigious Vienna Terzaghi Lecture

The Vienna Terzaghi Lecture 2022 has been awarded to Professor Lyesse Laloui of EPFL. Since 1997, the combined lecture and award have been given biennially to internationally renowned geotechnical engineers by the Association of Austrian Drilling, Well Construction and Foundation Engineering Companies (VÖBU), the Austrian Association of Engineers and Architects (ÖIAV), the Austrian National Committee (ASMGE) of the International Society for Soil Mechanics and Geotechnical Engineering (ISSMGE) and the Institute of Geotechnics, Foundation Engineering, Soil and Rock Mechanics at the University of Vienna.

The conference is named in honor of Karl von Terzaghi, who is considered the founding father of soil mechanics, a field of engineering exploring the mechanics of soils, and its application in geotechnical engineering. His radical work on the properties of soils led him to develop unifying concepts on earth pressure and slope stability.

This year’s winner, EPFL’s Lyesse Laloui, is Chair Professor of Soil Mechanics and the European Vice President-elect of the International Society of Soil Mechanics and Geotechnical Engineering (ISSMGE).

Throughout his distinguished career, Professor Laloui has looked to apply and build upon the fundamentals that Karl Terzaghi developed. Terzaghi observed that, “Rainfall-induced pore pressure hike is not the cause of landslides, but a contributing factor. There were many higher hikes in the geological past! The cause is long-term gradual, cumulative chemical weathering which weakens inter-granular bonds which leads to decrease of cohesion”.

These pioneering ideas became the foundational theory behind Laloui’s latest research project BIOGEOS, an ERC-funded exploration of the interaction between water and soils which, rather than decreasing the cohesion as described by Terzaghi, strengthens the cohesion through natural bio-cementation. Professor Laloui’s research is undertaking a multiphysical analysis of bio-cementation processes in nature and their practical engineering applications. He will present the outcomes to date in his lecture titled “Tailor-made soil properties by bio-geochemical means” at the Austrian Geotechnical Conference in January 2022.

Source: https://actu.epfl.ch/news/prof-lyesse-laloui-to-deliver-the-prestigious-vien/

A novel use of hydrogel encapsulation of bacteria for on-demand release of MICP in soils

Interested in knowing how can we control the location and timing of the Microbially-Induced Calcite Precipitation (MICP) reaction, and the structure and properties of the resulting carbonate minerals?

Our new paper “Controlling the calcium carbonate microstructure of engineering living building materials”, published in the Royal Society of Chemistry Journal of Materials Chemistry A introduces a novel use of hydrogel encapsulation of bacteria for on-demand release of MICP in soils.

The methods developed bring together multidisciplinary expertise in soil mechanics, material science and biological processes from three different laboratories of EPFL: the Laboratory of Soil Mechanics (LMS) (Dr Alexandra Clarà Saracho, Lorenzo Lucherini, Dr Dimitrios Terzis and Prof. Lyesse Laloui), the Soft Matter Laboratory (Matteo Hirsch and Prof. Esther Amstad) and the Stream Biofilm and Ecosystem Research Laboratory (Dr Hannes M. Peter).

This work has received funding from a 2018–2024 European Research Council (ERC) Advanced grant awarded to Prof. Lyesse Laloui, who heads the LMS and is a co-author of the paper, under the European Union’s Horizon 2020 research and innovation programme (Grant agreement No. 788587). The authors would also like to acknowledge the Gebert Rüf Stiftung (ref: GRS-027/19, EPFL grant number: 7683) innovation booster grant.

References

[1] https://pubs.rsc.org/en/content/articlelanding/2021/TA/D1TA03990C

[2] https://actu.epfl.ch/news/professor-laloui-awarded-a-prestigious-erc-advance/

[3] https://biogeos.epfl.ch/news/lyesse-laloui-awarded-a-prestigious-erc-proof-of-concept-grant/

JOIN US at LMS, EPFL

We are looking for a PhD candidate in geomechanics.

Would you like to influence the success of our high profile project BIOGEOS and gain a sense of contribution in building the next generation of sustainable geotechnics? If so, this is what you will do by joining our highly
motivated team at the the laboratory for Soil Mechanics (LMS) of the Swiss Federal Institute of Technology, Lausanne (EPFL).

BIOGEOS (BIO-mediated GEO-material Strengthening) is supported by an Advanced Grant of the European Research Council, awarded to Prof. Lyesse Laloui in 2018. We target the establishment of innovative, sustainable processes within mainstream geo-technical practices. Among the techniques developed at LMS is that of biocemented geo-materials. The significant impact of bio-cementation ranges from the protection of infrastructure against liquefaction & poor quality of foundation soils to mitigating risks related to landslides and soil erosion which are intensified by extreme weather.

BIOGEOS aims to crystallize new knowledge into constant innovation and implement state-of-the-art advances in the fields of micro-structural inspection, numerical modelling and material characterization.

CANDIDATE PROFILE: For PhD candidates a recent M.Sc. (or equivalent) degree in Civil Engineering or other related field is required. Background in Geotechnical Engineering, Porous/Fluid mechanics and Numerical methods is very much appreciated. Candidates are expected to demonstrate independent research and scientific reporting skills. Communication skills and teamwork attitude are a big plus. Selected candidates will be invited for an interview at EPFL.

CONDITIONS OF EMPLOYMENT: We are offering excellent research facilities and a competitive salary. The EPFL offers an outstanding international ecosystem full of training and development opportunities. We are looking for motivated candidates ready to undertake advanced experimental and numerical work within our team. The position includes part-time supervision of M.Sc. students and participation in teaching activities.

APPLICATIONS: The call is open and candidates are urged to apply as early as they can. Please contact recruitment.lms@epfl.ch for applications. Suitable candidates should send an e-mail including a cover letter describing interests and qualifications and a CV, as a single PDF.

Using electric current to stabilize low-permeability soils

EPFL scientists have developed a new approach to stabilizing clay soils. The method involves using a battery-like system to apply electric current to carbonate and calcium ions in order to promote soil consolidation. Their findings were published yesterday in Scientific Reports.

According to figures released by the UN yesterday, natural disasters have killed more than 1.2 million people since 2000 and cost nearly $ 3 trillion.These pressing threats bring into sharp focus the need for new answers to the problem of soil stabilization. Scientists at EPFL’s Laboratory of Soil Mechanics (LMS) have developed a number of sustainable solutions, including one that uses enzyme metabolism. Although these methods work for a wide range of soil types, they are considerably less effective when it comes to clay soils. In a paper published yesterday in Scientific Reports, the team demonstrates how chemical reactions can be enhanced by using a battery-like system to apply electric current.

A new type of biocement – produced in situ and at ambient temperature – has recently been put forth as a promising method for stabilizing various soil types. The method harnesses bacterial metabolism to produce calcite crystals that durably bond soil particles together. This biogeochemical process is energy-efficient and cost-effective, and could be rolled out quickly in the coming years. But since the ground needs to be impregnated for the method to work, it is less suited to low-permeability clay soils. Now, the LMS team has developed and successfully tested a viable alternative, which involves applying electric current using sunken electrodes. “Our findings show that this geoelectrochemical system does indeed influence key stages of the calcification process, especially the formation and growth of the crystals that bind the soil together and enhance its behavior,” says Dimitrios Terzis, a scientist at LMS and one of the co-authors of the paper.

The biocement is formed by introducing chemical species into the soil. These include dissolved carbonate and calcium ions, which carry opposite charges. Sunken anodes and cathodes are used to create an electric field, much in the same way as a giant battery. The current forces the ions to move across the low-permeability medium, where they intersect, mix together and eventually interact with soil particles. The result is the growth of carbonate minerals, which act as links or “bridges” that enhance the mechanical performance and resistance of soils.

Technology transfer grant

The paper, which sets out the team’s findings from observing and measuring the quality of these mineral bridges, paves the way for future developments in the field. Further tests, at different scales, are needed before the technology can be applied in the real world. The research was carried out under a 2018–2023 European Research Council (ERC) Advanced grant awarded to Prof. Lyesse Laloui, who heads the LMS and is a co-author of the paper. The project has three verticals, targeting the understanding of the fundamental mechanisms that occur at the soil-particle scale (micro-scale), the advanced characterization of mechanical behaviors at laboratory scale, and the large-scale development and demonstration of innovative systems in natural environments. In July 2020, the same research team obtained an additional ERC Proof of Concept grant to accelerate technology transfer to industrial applications.

In the past, soils were treated solely as a mix of solid earth, air and water. According to the co-authros, this research highlights how cross-disciplinary approaches i.e., drawing on concepts from biology and electro-chemistry and incorporating advances and mechanisms from other scientific fields can open exciting new paths and yield significant benefits.

References

[1] https://www.nature.com/articles/s41598-020-73926-z 

[2] https://ec.europa.eu/jrc/en/news/critical-infrastructure-be-hard-hit-climate-hazards

[3] https://actu.epfl.ch/news/professor-laloui-awarded-a-prestigious-erc-advance/

[4] https://biogeos.epfl.ch/news/lyesse-laloui-awarded-a-prestigious-erc-proof-of-concept-grant/

Source: EPFL homepage